Data items in the APPLICATIONS category describe the application procedure to obtain beamtime at a given beamline. Example 1 - <biosync:bsync_admin_applicationsCategory> <biosync:bsync_admin_applications beamline_id="1"> <biosync:beamline_name>d1</biosync:beamline_name> </biosync:bsync_admin_applications> </biosync:bsync_admin_applicationsCategory> This is a short beamline identifier. deadline for beamtime applications Need new example here. procedure for applications Need new example here. url for applications. Need new example here. name of the url for applications. Procedure for obtaining Beam Time This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. Data items in the BSYNC_ADMIN_CONTACT category describe the adiministrative, logistical, contact and travel infomtion in preparing a trip to a synchrotron. Example 1 - <biosync:bsync_admin_contactCategory> <biosync:bsync_admin_contact beamline_id="1"> <biosync:beamline_name>d1</biosync:beamline_name> <biosync:for_technical_email>smith@synchrotron.edu</biosync:for_technical_email> <biosync:for_technical_name>Joe Smith</biosync:for_technical_name> </biosync:bsync_admin_contact> </biosync:bsync_admin_contactCategory> This is a short beamline identifier. Address of beamline contact person. Need new example here. Email of beamline contact person. Need new example here. Name of contact person for proposal information Need new example here. Phone number of beamline contact person. Need new example here. Email of beamline contact person. Need new example here. Name of beamline contact person for technical information. Need new example here. Phone number of beamline contact person. Need new example here. The shipping address of beamline facilities. Need new example here. Website with staff contacts. Need new example here. This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. Data items in the BSYNC_ADMIN_LOGOS category describe the logo associated with each beamline and synchrotron. Example 1 <biosync:bsync_admin_logosCategory> <biosync:bsync_admin_logos beamline_id="1"> <biosync:crystallography>hbar_pxssrl.gif</biosync:crystallography> <biosync:synchrotron>hbar_ssrl.gif</biosync:synchrotron> </biosync:bsync_admin_logos> </biosync:bsync_admin_logosCategory> This data item is a short identifier for the beamline. The logo for the cat or prt or crystallography group that operates the beamline. hbar_pxssrl.gif The logo for the synchrotron facility hbar_ssrl.gif This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. Data items in the SCHEDULES category describe the application procedure to obtain beamtime at a given beamline. Example 1 - <biosync:bsync_admin_schedulesCategory> <biosync:bsync_admin_schedules beamline_id="1"> <biosync:beamline_name>d1</biosync:beamline_name> </biosync:bsync_admin_schedules> </biosync:bsync_admin_schedulesCategory> beamline schedules Need new example here. This is a short beamline identifier. long term operating schedule for the synchrotron. Need new example here. current ring status Procedure for obtaining Beam Time This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. You must press the "Save General Beamline Information" button to save changes. Then, Use the "UPDATE PROFILE" button at the top of this page to have the changes appear on the BioSync web site. Example 1 - <biosync:bsync_beamlineCategory> <biosync:bsync_beamline facility_id="aps" id="19_ID"> <biosync:experiments>MAD</biosync:experiments> <biosync:owner>SBC-CAT</biosync:owner> </biosync:bsync_beamline> </biosync:bsync_beamlineCategory> A description of the beamline. Need new example here. A description of special aspects of the beamline. Need new example here. A description of the experiments which can be performed on this beamline. MAD Percentage of beamtime available to general user. 25 The name of the beamline. XB11 18-ID Beamtime is available to the general user. yes no, beamline is being commisioned The name of the owners of the beamline. SBC-CAT The url for the website of the owner of the beamline. http://www.sbc.anl.gov/ Website with current beamline operating schedule http://www.x8c.nsls.bnl.gov/schedule.html This data item is a pointer to attribute type in category bsync_diffrn_source in the BSYNC_DIFFRN_SOURCE category. A description of the beamline template. Need new example here. The url for the beamline website. http://www.sbc.anl.gov/Facilities/beamline_19-ID.html This data item is a pointer to attribute id in category bsync_facility in the BSYNC_FACILITY category. A unique identifier for the beamline within a facility. 1 2 3 Data items in the DETECTORS category describe the detector to measure the scattered radiation, including any analyser and post-sample collimation. Example 1 - <biosync:bsync_diffrn_detectorCategory> <biosync:bsync_diffrn_detector beamline_id="1"> <biosync:beamline_name>d1</biosync:beamline_name> <biosync:detector>multiwire</biosync:detector> <biosync:type>Siemens</biosync:type> </biosync:bsync_diffrn_detector> </biosync:bsync_diffrn_detectorCategory> This is a short beamline identifier. A description of special aspects of the radiation detector. Need new example here. The general class of the radiation detector. photographic film scintillation counter CCD plate BF~3~ counter The make, model or name of the detector device used. This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. Data items in the LAB category describe the laboratory facilities and biohazard capabilities at the beamline Example 1 - <biosync:bsync_diffrn_labCategory> <biosync:bsync_diffrn_lab beamline_id="1"> <biosync:beamline_name>A1</biosync:beamline_name> <biosync:biohazard>P2</biosync:biohazard> <biosync:lab_facilities>cold room and biochemistry</biosync:lab_facilities> </biosync:bsync_diffrn_lab> </biosync:bsync_diffrn_labCategory> This is a short beamline identifier. Biohazard level allowed at the beamline Need new example here. Lab Facilities at the beamline. Need new example here. Lab name. This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. Data items in the MEASUREMENT category record details about data measurement and the manner in which the diffraction data are measured. Example 1 - <biosync:bsync_diffrn_measurementCategory> <biosync:bsync_diffrn_measurement beamline_id="1" device="3-circle camera"> <biosync:beamline_name>bxk1</biosync:beamline_name> <biosync:device_details> detector distance 12 cm</biosync:device_details> <biosync:device_type>Supper model x</biosync:device_type> <biosync:method>omega scan</biosync:method> </biosync:bsync_diffrn_measurement> </biosync:bsync_diffrn_measurementCategory> This data item is a short identifier for the beamline. Cryo capability Oxford Instruments Cryojet A description of special aspects of the device used to measure the diffraction intensities. Need new example here. The range of pin lengths. total height of mounting pin (or capillary) and goniometer head should be between 53 mm and 63 mm The make, model or name of the measurement device (goniometer) used. Supper model q Huber model r Enraf-Nonius model s homemade The range of crystal to detector distances. 50-1000 mm Method used to measure intensities. profile data from theta/2theta scans Additional instrumentation available for use during data collection. Motorized optical rail, slits, sample alignment stages, grazing incidence instrument. Restrictions due to possible collision. omega: +/-25 (depends on detector distance), chi +/-95, phi no limits. Capabilities for special data collection. Facilities for measurement at S K/Cl K edge region for biological samples. 2theta range vertical movement of -5 to 35 This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. The general class of goniometer or device used to support and orient the specimen. 3-circle camera 4-circle camera kappa-geometry camera oscillation camera precession camera Data items in the RADIATION category describe the radiation used in measuring diffraction intensities, its collimation and monochromatisation before the sample. Example 1 - based on PDB entry 5HVP and laboratory records for the structure corresponding to PDB entry 5HVP <biosync:bsync_diffrn_radiationCategory> <biosync:bsync_diffrn_radiation beamline_id="1" monochromator="graphite"> <biosync:beamline_name>b1</biosync:beamline_name> <biosync:collimation>0.3 mm double pinhole</biosync:collimation> </biosync:bsync_diffrn_radiation> </biosync:bsync_diffrn_radiationCategory> This data item is a short identifier for the beamline. The collimation or focusing applied to the radiation. 0.3 mm double-pinhole 0.5 mm focusing mirrors Divergence definition needed. Energy range. Absorption edge in angstroms of the radiation filter used. Flux definition needed 1x10E(10) p/s through 0.2 mm aperture Additional details about radiation flux. Half-width in millimetres of the incident beam in the direction perpendicular to the diffraction plane. The energy cuttoff (KeV) for the mirror system. 11.25 A system of optical mirrors used to focus the incident beam as it leaves the source bent cylinder, Pt-coated Si (1:1 demagnifcation) The type of crystal(s) in the monochromator The indices of the Bragg reflection used for the filtering is specified. Si(111) or W/B4C multilayers, water cooled. a general description of the optics including collimation and monochromator. 2-crystal monochromator, Si111, 1m long Rh coated bent cylindrical mirror for horizontal and vertical focussing Name of the type of radiation used. It is strongly encouraged that this field be specified so that the probe radiation can be simply determined. Resolving power of ... Additional details about the wavelength The maximum radiation wavelength in angstroms or zero if single wavelength. The minimum radiation wavelength in angstroms or the radiation wavelength if a single wavelength. The range of wavelength in angstroms. This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. The method used to obtain monochromatic radiation. If a mono- chromator crystal is used the material and the indices of the Bragg reflection are specified. Zr filter Ge 220 none equatorial mounted graphite Data items in the SOURCE category record details of the source of radiation. Example 1 <biosync:bsync_diffrn_sourceCategory> <biosync:bsync_diffrn_source beamline_id="1" type="Rigaku RU-200"> <biosync:beamline_name>s1</biosync:beamline_name> <biosync:power>50 kw, 180 mA</biosync:power> <biosync:source>rotating anode</biosync:source> </biosync:bsync_diffrn_source> </biosync:bsync_diffrn_sourceCategory> average beam lifetime 40 hrs (75 mA average over 24 hr fill period) This data item is a short identifier for the beamline. The current in milliamperes at which the radiation source was operated. A description of special aspects of the radiation source used. The power in kilowatts at which the radiation source was operated. The dimensions of the source as viewed from the sample. 8mm x 0.4 mm fine-focus The general class of the radiation source. undulator bending magnet wiggler The voltage in kilovolts at which the radiation source was operated. This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. The make, model or name of the source of radiation. NSLS beamline X8C Rigaku RU200 You must press the "Save General Synchrotron Information" button to save changes. Then, Use the "UPDATE PROFILE" button at the top of this page to have the changes appear on the BioSync web site. Example 1 - <biosync:bsync_facilityCategory> <biosync:bsync_facility id="aps"> <biosync:details> 3rd generation light source ...</biosync:details> <biosync:name>Advanced Photon Source</biosync:name> <biosync:operation>Argonne National Lab</biosync:operation> </biosync:bsync_facility> </biosync:bsync_facilityCategory> A description of special aspects of the facility. 3rd generation light source The location of the synchrotron facility. City, State Argonne,IL A more detailed description of the location of the synchrotron facility. Argonne,IL The full name of the synchrotron facility Advanced Photon Source. The lab or university which operates the synchrotron. Brookhaven National Lab A paragraph describing the organization of the synchrotron. Participating Research Teams. The street address of the synchrotron facility. 1 Cyclotron Road The street address of the synchrotron facility. 1 Cyclotron Road Site location (URL) The zip code address of the synchrotron facility. 1 Cyclotron Road The synchrotron name, acronym. aps ssrl Data items in the BSYNC_FACILITY_CRYSTALLOGRAPHY category record details about any special crystallography facility, organization, or website. Example 1 - SSRL <biosync:bsync_facility_crystallographyCategory> <biosync:bsync_facility_crystallography facility_id="ssrl" name=" Structural Molecular Biology"> <biosync:url>http://smb.slac.stanford.edu/</biosync:url> </biosync:bsync_facility_crystallography> </biosync:bsync_facility_crystallographyCategory> The category for the structural biology organization - structural genomics, crystallography group A brief description of the specialized organization or facility within the synchrotron organization that operates beamlines for crystallography More details about the specialized organization or facility within the synchrotron organization that operates beamlines for crystallography Logo for the crystallography facility or website. Website for the organization This data item is a pointer to attribute id in category bsync_facility in the BSYNC_FACILITY category. APS Name of specialized organization or facility within the synchrotron organization that operates beamlines for crystallography SBC-CAT Data items in the BSYNC_FACILITY_NEWS category record details meetings, workshops, applications deadlines, news and announcements. Example 1 - SSRL <biosync:bsync_facility_newsCategory> <biosync:bsync_facility_news facility_id="ssrl"> <biosync:details>summer school for crystallographers</biosync:details> <biosync:url>http://www-ssrl.slac.stanford.edu/welcome.html</biosync:url> </biosync:bsync_facility_news> </biosync:bsync_facility_newsCategory> A date for the news item. The date format is yyyy-mm-dd. 1990-07-12 News or announcement description. Title of news or announcement. Site location (URL) for more information This data item is a pointer to attribute id in category bsync_facility in the BSYNC_FACILITY category. Data items in the BSYNC_FACILITY_WEBSITE category record details about hyperlinks and desciptions of those links to the synchrotron facility website. This category forms the basis of the BioSync Web portal. Example 1 - SSRL <biosync:bsync_facility_websiteCategory> <biosync:bsync_facility_website facility_id="ssrl"> <biosync:facility_map_url>http://www-ssrl.slac.stanford.edu/welcome.html</biosync:facility_map_url> </biosync:bsync_facility_website> </biosync:bsync_facility_websiteCategory> A description of the url for accomodations at the facility The url for accomodations at the facility A description of the url for directions to the facility The url for directions to the facility A description of the url for the facility map The url for a map of the synchrotron facility A description of the url for long term operation of the facility The url for long term operation of the facility A description of the url for crystallography publications from research at the facility The url for crystallography publications from research at the facility A description of the url for the current ring status The url for the current ring status A description of safety training at the facility The url for info. on safety training at the facility This data item is a pointer to attribute id in category bsync_facility in the BSYNC_FACILITY category. Data items in the HARDWARE category record details about the hardware available for data collection and structure determination and for data back-up. Example 1 - <biosync:bsync_hardwareCategory> <biosync:bsync_hardware beamline_id="1"> <biosync:backup>FireWire and USB disk drives</biosync:backup> </biosync:bsync_hardware> </biosync:bsync_hardwareCategory> Backup hardware. This data item is a short identifier for the beamline. The name of the hardware. This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. Data items in the BSYNC_LINKS category record details about hyperlinks and desciptions of those links to the synchrotron facility website. This category forms the basis of the BioSync Web portal. Example 1 - SSRL <biosync:bsync_linksCategory> <biosync:bsync_links facility_id="ssrl" name="Stanford Synchrotron Radiation Laboratory (SSRL)"> <biosync:description>welcome page for all beamlines</biosync:description> <biosync:url>http://www-ssrl.slac.stanford.edu/welcome.html</biosync:url> </biosync:bsync_links> </biosync:bsync_linksCategory> The category for the link based on the BioSync Web site, contacts, travel, publications, schedules A description of the website Site location (URL) for the link This data item is a pointer to attribute id in category bsync_facility in the BSYNC_FACILITY category. Site name for the link. Data items in the SOFTWARE category record details about the software available for data collection and structure determination. Example 1 - This data item is a short identifier for the beamline. The classification of the program according to its major function. The compiler used to compile the software. Convex Fortran gcc DEC C The version of the compiler used to compile the software. 3.1 2.1 alpha The recognized contact author of the software. This could be the original author, modifier of the code, or maintainer, but should be the individual most commonly associated with the code. T. Alwyn Jones Axel Brunger The email address of the attribute contact_author in category bsync_software. bourne@sdsc.edu The date the software was released. 1991-10-01 1990-04-30 Any prerequisite software required to run attribute name in category bsync_software. PDBlib class library Description of the software. Uses method of restrained least squares The hardware upon which the software was run. Sun Sparc 10 model 41 Dec Alpha 3000 model 500S Silicon Graphics Elan Compaq PC 486/66 The major computing language in which the software is coded. An Internet address in the form of a URL describing where details of the software can be found. http://rosebud.sdsc.edu/projects/pb/IUCr/software.html ftp://ftp.sdsc.edu/pub/sdsc/biology/ Any noteworthy modifications to the base software, if applicable. Added support for space group F432 The name of the operating system under which the software runs. Ultrix OpenVMS DOS Windows 95 Windows NT Irix HPUX DEC Unix The version of the operating system under which the software runs. 3.1 4.2.1 The classification of the software according to the most common types. This data item is a pointer to attribute id in category bsync_beamline in the BSYNC_BEAMLINE category. The name of the software. Merlot O Xengen X-plor The version of the software. v1.0 beta 3.1-2 unknown